[ aws . comprehendmedical ]
detect-phi¶
Description¶
Inspects the clinical text for protected health information (PHI) entities and returns the entity category, location, and confidence score for each entity. Amazon Comprehend Medical only detects entities in English language texts.
See also: AWS API Documentation
See ‘aws help’ for descriptions of global parameters.
Synopsis¶
detect-phi
--text <value>
[--cli-input-json | --cli-input-yaml]
[--generate-cli-skeleton <value>]
Options¶
--text (string)
A UTF-8 text string containing the clinical content being examined for PHI entities. Each string must contain fewer than 20,000 bytes of characters.
--cli-input-json | --cli-input-yaml (string)
Reads arguments from the JSON string provided. The JSON string follows the format provided by --generate-cli-skeleton. If other arguments are provided on the command line, those values will override the JSON-provided values. It is not possible to pass arbitrary binary values using a JSON-provided value as the string will be taken literally. This may not be specified along with --cli-input-yaml.
--generate-cli-skeleton (string)
Prints a JSON skeleton to standard output without sending an API request. If provided with no value or the value input, prints a sample input JSON that can be used as an argument for --cli-input-json. Similarly, if provided yaml-input it will print a sample input YAML that can be used with --cli-input-yaml. If provided with the value output, it validates the command inputs and returns a sample output JSON for that command. The generated JSON skeleton is not stable between versions of the AWS CLI and there are no backwards compatibility guarantees in the JSON skeleton generated.
See ‘aws help’ for descriptions of global parameters.
Examples¶
Note
To use the following examples, you must have the AWS CLI installed and configured. See the Getting started guide in the AWS CLI User Guide for more information.
Unless otherwise stated, all examples have unix-like quotation rules. These examples will need to be adapted to your terminal’s quoting rules. See Using quotation marks with strings in the AWS CLI User Guide .
Example 1: To detect protected health information (PHI) directly from text
The following detect-phi example displays the detected protected health information (PHI) entities directly from input text.
aws comprehendmedical detect-phi \
--text "Patient Carlos Salazar presented with rash on his upper extremities and dry cough. He lives at 100 Main Street, Anytown, USA where he works from his home as a carpenter."
Output:
{
"Entities": [
{
"Id": 0,
"BeginOffset": 8,
"EndOffset": 21,
"Score": 0.9914507269859314,
"Text": "Carlos Salazar",
"Category": "PROTECTED_HEALTH_INFORMATION",
"Type": "NAME",
"Traits": []
},
{
"Id": 1,
"BeginOffset": 94,
"EndOffset": 109,
"Score": 0.871849775314331,
"Text": "100 Main Street, Anytown, USA",
"Category": "PROTECTED_HEALTH_INFORMATION",
"Type": "ADDRESS",
"Traits": []
},
{
"Id": 2,
"BeginOffset": 145,
"EndOffset": 154,
"Score": 0.8302185535430908,
"Text": "carpenter",
"Category": "PROTECTED_HEALTH_INFORMATION",
"Type": "PROFESSION",
"Traits": []
}
],
"ModelVersion": "0.0.0"
}
For more information, see Detect PHI in the Amazon Comprehend Medical Developer Guide.
Example 2: To detect protect health information (PHI) directly from a file path
The following detect-phi example shows the detected protected health information (PHI) entities from a file path.
aws comprehendmedical detect-phi \
--text file://phi.txt
Contents of phi.txt:
"Patient Carlos Salazar presented with a rash on his upper extremities and a dry cough. He lives at 100 Main Street, Anytown, USA, where he works from his home as a carpenter."
Output:
{
"Entities": [
{
"Id": 0,
"BeginOffset": 8,
"EndOffset": 21,
"Score": 0.9914507269859314,
"Text": "Carlos Salazar",
"Category": "PROTECTED_HEALTH_INFORMATION",
"Type": "NAME",
"Traits": []
},
{
"Id": 1,
"BeginOffset": 94,
"EndOffset": 109,
"Score": 0.871849775314331,
"Text": "100 Main Street, Anytown, USA",
"Category": "PROTECTED_HEALTH_INFORMATION",
"Type": "ADDRESS",
"Traits": []
},
{
"Id": 2,
"BeginOffset": 145,
"EndOffset": 154,
"Score": 0.8302185535430908,
"Text": "carpenter",
"Category": "PROTECTED_HEALTH_INFORMATION",
"Type": "PROFESSION",
"Traits": []
}
],
"ModelVersion": "0.0.0"
}
For more information, see Detect PHI in the Amazon Comprehend Medical Developer Guide.
Output¶
Entities -> (list)
The collection of PHI entities extracted from the input text and their associated information. For each entity, the response provides the entity text, the entity category, where the entity text begins and ends, and the level of confidence that Comprehend Medical; has in its detection.
(structure)
Provides information about an extracted medical entity.
Id -> (integer)
The numeric identifier for the entity. This is a monotonically increasing id unique within this response rather than a global unique identifier.
BeginOffset -> (integer)
The 0-based character offset in the input text that shows where the entity begins. The offset returns the UTF-8 code point in the string.
EndOffset -> (integer)
The 0-based character offset in the input text that shows where the entity ends. The offset returns the UTF-8 code point in the string.
Score -> (float)
The level of confidence that Comprehend Medical; has in the accuracy of the detection.
Text -> (string)
The segment of input text extracted as this entity.
Category -> (string)
The category of the entity.
Type -> (string)
Describes the specific type of entity with category of entities.
Traits -> (list)
Contextual information for the entity.
(structure)
Provides contextual information about the extracted entity.
Name -> (string)
Provides a name or contextual description about the trait.
Score -> (float)
The level of confidence that Comprehend Medical; has in the accuracy of this trait.
Attributes -> (list)
The extracted attributes that relate to this entity.
(structure)
An extracted segment of the text that is an attribute of an entity, or otherwise related to an entity, such as the dosage of a medication taken. It contains information about the attribute such as id, begin and end offset within the input text, and the segment of the input text.
Type -> (string)
The type of attribute.
Score -> (float)
The level of confidence that Comprehend Medical; has that the segment of text is correctly recognized as an attribute.
RelationshipScore -> (float)
The level of confidence that Comprehend Medical; has that this attribute is correctly related to this entity.
RelationshipType -> (string)
The type of relationship between the entity and attribute. Type for the relationship is
OVERLAP, indicating that the entity occurred at the same time as theDate_Expression.Id -> (integer)
The numeric identifier for this attribute. This is a monotonically increasing id unique within this response rather than a global unique identifier.
BeginOffset -> (integer)
The 0-based character offset in the input text that shows where the attribute begins. The offset returns the UTF-8 code point in the string.
EndOffset -> (integer)
The 0-based character offset in the input text that shows where the attribute ends. The offset returns the UTF-8 code point in the string.
Text -> (string)
The segment of input text extracted as this attribute.
Category -> (string)
The category of attribute.
Traits -> (list)
Contextual information for this attribute.
(structure)
Provides contextual information about the extracted entity.
Name -> (string)
Provides a name or contextual description about the trait.
Score -> (float)
The level of confidence that Comprehend Medical; has in the accuracy of this trait.
PaginationToken -> (string)
If the result of the previous request to
DetectPHIwas truncated, include thePaginationTokento fetch the next page of PHI entities.
ModelVersion -> (string)
The version of the model used to analyze the documents. The version number looks like X.X.X. You can use this information to track the model used for a particular batch of documents.